Best Practices for Managing Multiple Shopify Stores

Proper management of multiple Shopify stores can lead to increased sales and profitability, positively impacting the business's

Kelli Harris
By Kelli Harris
a woman standing in front of a brick building
Edited by Nelsy Mtsweni

Published June 25, 2024.

Man with multiple arms and symbols on blue background

The digital landscape has seen a seismic shift in the past two years, with over two billion online consumers worldwide by the end of 2021. As businesses look to expand by managing multiple Shopify stores, the complexity of Shopify management becomes apparent, especially when it can prove challenging to manage inventory for a single online store.

This highlights the common perception that managing multiple online stores is hard. However, this article offers insights into:

  • Best practices for better management
  • Reasons for opting for multiple stores
  • Common challenges faced with managing multiple stores

4 Best Practices for Streamlined Store Management

Egnition infographic showing the 4 best practices for streamlined Shopify store management

1. Tailor Each Store to Its Audience

To ensure your Shopify stores resonate with their respective target consumers, optimize them individually. This may involve:

  • Using local keywords
  • Promoting region-specific deals
  • Adapting site design or URL structure
  • Offering content that suits different demographics
  • Tailor product images and descriptions for diverse customer contexts

2. Implement Real-Time Inventory Updates

Selling the same products across multiple sites demands real-time inventory updates. Centralizing inventory management is the most effective way to ensure accurate counts, even when selling on multiple fronts. Solutions like the Multi-Store Sync Power app are adept at keeping your SKU data synchronized across your Shopify stores, ensuring that inventory is synced on every order, refund, or cancellation and automatically reflected in your inventory.

Best for multi-store Shopify owners
Multi-Store Sync Power All Stores

Multi‑Store Sync Power

Ideal solution for seamless Shopify inventory sync



Customer Support

24/7 availability

Free trial

7-day free trial

Real-Time Inventory Sync


Brief overview

The Multi‑Store Sync Power app by EGNITION is a comprehensive solution designed for merchants managing multiple Shopify stores. It facilitates automatic synchronization and real-time updates of inventory, products, and collections across linked stores. This streamlines the entire process of multi-store inventory management.

Thanks to its rich features, setup might be challenging for less tech-savvy users. However, outstanding customer support ensures smooth setup and integration. Once configured, the intuitive dashboard simplifies multi-store management.


  • Synchronize inventory levels across stores / locations.
  • Synchronize products’ fields across stores / locations.
  • Create products automatically in all connected stores / locations.
  • Complete multi-location support for flexible synchronization.
  • See if any SKUs/Barcodes are not set up properly and missed sync process.

Pros and cons

Synchronized inventory management across multiple stores

Streamlined POS system across locations

Quality control over SKUs and barcodes

Outstanding 24/7 customer support

Cost-friendly monthly pricing

7-day free trial

Configuration can be confusing for less tech-savvy users

3. Centralize Order Management

It is important to centralize order management to attract, engage, and convert customers from anywhere. You can do this by integrating all order data, including fulfillment, returns, customer support, and dropshipping, into a centralized system. This streamlines order management across your various online stores.

Best for Shopify inventory auto-sorting and collection management
a blue background with the words best sellers resort

Bestsellers reSort

Auto-sort and organize products in collections

Read Review



Customer support

24/7 availability

Free trial

7-day free trial

Automated workflows

Create a custom order of products in collections

Bestsellers reSort by EGNITION is a powerful asset for Shopify retailers looking to manage inventory effectively while keeping up with dynamic consumer interests. It's more than just an organizational tool; this app provides a powerful way to enhance visibility and tailor product displays to market trends and personal strategies.

With its intuitive setup for online merchandising, Bestsellers reSort simplifies the process of auto-organizing products, making it easier to showcase new arrivals and featured items. It's a practical, balanced solution for efficiently managing inventory and boosting sales.

  • Automatically sort and organize products in collections.
  • Customize sorting rules for every collection based on product type.
  • Add featured products to top of collections. Add manually or schedule.
  • Organize products using tags and create a very specific order of products.
  • Mix and match sorting rules to create a unique sorting order to drive sales.

Enhances product visibility based on customer preferences

Easily organizes products in collections

Flexible promotion of featured and new items

Manages out-of-stock items effectively

Sorts by various metrics like revenue, sales, etc.

Reduces manual effort in product organization

A slight learning curve for new users

Advanced features restricted in the free version

4. Use a Product Information Management (PIM) System

When you have multiple Shopify stores, product information can become fragmented. A Product Information Management (PIM) system centralizes and standardizes your product data, ensuring consistency across all your stores.

Utilizing the best PIM systems for Shopify will significantly enhance the customer experience by ensuring they receive accurate and consistent product information, no matter which store they visit. This leads to a more trustworthy and satisfying shopping experience.

» Want to further boost customer experience by ensuring you always have bestsellers in stock? Weigh the pros and cons of bulk inventory management

Why You Should Consider Creating Multiple Shopify Stores

1. You're Selling Internationally

Expanding globally requires tailoring your stores to cater to diverse regions. With multiple Shopify stores, you can effortlessly customize language, currency, products, website layout, and even offer region-exclusive products that resonate with local markets.

2. You're Targeting Different Customer Segments

Regardless of your business model, creating separate Shopify sites for distinct customer segments is a wise strategy. This allows you to cater to the unique needs of each customer group while keeping all stores under one domain umbrella.

3. You Want to Create an Outlet

If you want to clear warehouse space or offer discounted products without diluting your brand's value, consider setting up a separate Shopify store as an outlet. This allows you to reach new customers without compromising your brand image.

Common Challenges With Managing Multiple Shopify Stores

While having multiple Shopify stores has its advantages, managing them can be time-consuming, and there are different challenges that go with it:

  • Order Processing You'll have to manage orders on each unique site, which can make fulfillment and return processing more difficult and increase the risk of errors.
  • Keeping Track of Inventory In cases where some products are sold on both sites, you will have to update and manage the inventory of multiple Shopify stores.
  • Managing Product Data Your shops' structures may differ, making it difficult to organize product data across multiple shops. This includes product names, images, descriptions, pricing, and so on, which might affect your bottom line.
  • System Integrating Integrating other ERPs and point-of-sale (POS) systems becomes more complex.

» Shopify sellers must be prepared to tackle problems

Managing Multiple Shopify Stores With Ease

Efficiently tracking inventory on Shopify is crucial for keeping everything in order while prioritizing customer satisfaction. With these strategies, you can efficiently oversee multiple Shopify stores like a pro.

If managing multiple Shopify stores feels overwhelming, fret not. By employing the right tools and strategies, you can simplify the process and reap the benefits. Consider utilizing apps like Multi-Store Sync Power, which can work like magic to manage all your stores in one place, saving you time and reducing stress.

Don't Know what Shopify is?

Start your own online eCommerce business using Shopify platform. Shopify gives you all the tools needed to make the journey easier, faster and more profitable.

Frequent Releases

We work tirelessly to deliver more value to your business. Our roadmap is largely based on the questions you ask. We listen and we deliver as often as we can.

24/7/365 apps support

You can reach out to us via a dedicated support icon in the apps. We're always there. Or simply send us an email with your questions at

Pin It on Pinterest